Table 2 Assembly statistics. Statistics of “total transcripts” includes assembled ERCC and phiX transcripts. All other statistics are excluding ERCC and phiX transcripts
From: Molecular analysis of the Sydney rock oyster (Saccostrea glomerata) CO2 stress response
Reference transcriptome | |
|---|---|
Total transcripts (#) | 718,804 |
N50 length (bp) | 913 |
Mean transcript length (bp) | 620 |
Min transcript length (bp) | 201 |
Max transcript length (bp) | 36,260 |
Non-redundant transcripts (#) | 708,463 |
N50 length (bp) | 836 |
Mean transcript length (bp) | 595 |
Min transcript length (bp) | 201 |
Max transcript length (bp) | 36,260 |
n transcripts < 500 bp | 485,634 |
n transcripts 500-1000 bp | 129,025 |
n transcripts > 1000 bp | 93,805 |
CEGMA | |
Complete proteins (%) | 93.15 |
Partial proteins (%) | 98.79 |